rs29799771 SNP Detail

Summary

• ID
  rs29799771
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:27335382 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAAAACAAA ACAAAACAGG
  GAAATGGTGG GTCACAAGAT CCCAGCCTCC AAGGCTTCTT AAAATAGTTA TCGTCTTTTG
  GGCTAGTGTA GTGTAGTATA ATATCAGTTT GGACCACTTC CTGTGACATA GGCTGCCCTT
  GATGACCTGC TCAATAGAGC CACATCTGGA ATGCACCAGG ACCAGTGCTT TGTTCTGTGA
  R
  CAGGAGGCAC TCATAGTCTC TAGCCTGCTA CAAGTGCCAA ACGACTTGGT TTCATGATAT
  GCCAGCCTGG ATTTTGAGTT TCTGAGGCTC CTCTGACATT TGACCCACAG CAGAGCAACT
  TGAGCACCAG TGTCCAAGAG AGCCATAAAC ATCTGCATAC CACATTTCTC ACTTCCGTTT
  ATATGCAGAC CATTGGTCTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	C3H/HeJ	C57BL/6J	DBA/2J	MOLF/EiJ	WSB/EiJ
ss45494421	mCV22684213	ABI	CRAMUS_MOUSE	f	SNP	A	G			A	A
ss49568747	NES12892296	PERLEGEN	MM_PANEL2	f	SNP			G	G			A	A
ss134703421	ENSMUSSNP5360162	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G				A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	C3H/HeJ	C57BL/6J	DBA/2J	MOLF/EiJ	WSB/EiJ
rs29799771					SNP	A	G	G	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49568747	NES12892296	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:27335382 () rs orientation: forward

Symbol	Name	Function Class
Gm42192	predicted gene, 42192	within coordinates
Rr574384	regulatory region 574384	1090 bp distal
Rr574385	regulatory region 574385	457 bp distal
Rr574386	regulatory region 574386	1635 bp proximal