rs29799770 SNP Detail

Summary

• ID
  rs29799770
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:27335457 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTTGGGCTA GTGTAGTGTA
  GTATAATATC AGTTTGGACC ACTTCCTGTG ACATAGGCTG CCCTTGATGA CCTGCTCAAT
  AGAGCCACAT CTGGAATGCA CCAGGACCAG TGCTTTGTTC TGTGAACAGG AGGCACTCAT
  AGTCTCTAGC CTGCTACAAG TGCCAAACGA CTTGGTTTCA TGATATGCCA GCCTGGATTT
  Y
  GAGTTTCTGA GGCTCCTCTG ACATTTGACC CACAGCAGAG CAACTTGAGC ACCAGTGTCC
  AAGAGAGCCA TAAACATCTG CATACCACAT TTCTCACTTC CGTTTATATG CAGACCATTG
  GTCTGTAGTA GGGGTCTAAG CCTCAGTCTA CCCCTAGCCT GTCTCTTAAA ATATGATAGG
  AGGGGTCCCA GTGATGGCCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MOLF/EiJ	WSB/EiJ
ss45511006	mCV22684214	ABI	CRAMUS_MOUSE	f	SNP	T	C			T		T
ss49568746	NES12892298	PERLEGEN	MM_PANEL2	f	SNP		C	C	C		C	T	T	T
ss134703424	ENSMUSSNP3048925	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C					T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MOLF/EiJ	WSB/EiJ
rs29799770					SNP	T	C	C	C	T	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49568746	NES12892298	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:27335457 () rs orientation: forward

Symbol	Name	Function Class
Gm42192	predicted gene, 42192	within coordinates
Rr574384	regulatory region 574384	1165 bp distal
Rr574385	regulatory region 574385	532 bp distal
Rr574386	regulatory region 574386	1560 bp proximal