rs29799769 SNP Detail

Summary

• ID
  rs29799769
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:27335819 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTCTTAAAA TATGATAGGA
  GGGGTCCCAG TGATGGCCTT TCTCTGACAG TGGCATGCAT TACTTCCTCT GCATGCCCTG
  AAGATGCTGG TGGGCATGTG GAGATCAGAG GTCCATCATC AGATCATTCC AGTCAAAGGA
  GCTCCCTGCT ACTTGAGTGC ATCTAGCTAA ACATCTCCTC TTAACTGTGA GGGTGGCTCC
  R
  CAGCTCAGTT GAGAATCTCA GTTGGAGGAA AATTTTACCA TCCCATTGTG GACCCCTGAG
  TGATCACCAT AGGCACACAG ACCTCTCCTG GATTCAGAGC CTAGTGTGGG CTCTCTCTCT
  CTTTCTCTCT CTCTCTCTCT CTCTCTCTCT CTCCCTCTCT CCATTATTAT TCTTACTGTG
  TGTGCATGCA AGTGCACATG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MOLF/EiJ	NOD/ShiLtJ	WSB/EiJ
ss45412771	mCV22684215	ABI	CRAMUS_MOUSE	f	SNP	A	G			A		A
ss49568745	NES12892300	PERLEGEN	MM_PANEL2	f	SNP		G	G	G		A		G	A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MOLF/EiJ	NOD/ShiLtJ	WSB/EiJ
rs29799769					SNP	A	G	G	G	A	A	A	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49568745	NES12892300	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:27335819 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13020	CpG island 13020	1817 bp proximal
Gm42192	predicted gene, 42192	within coordinates
Rr574384	regulatory region 574384	1527 bp distal
Rr574385	regulatory region 574385	894 bp distal
Rr574386	regulatory region 574386	1198 bp proximal