rs29799768 SNP Detail

Summary

• ID
  rs29799768
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:27335848 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGATGGCCT TTCTCTGACA
  GTGGCATGCA TTACTTCCTC TGCATGCCCT GAAGATGCTG GTGGGCATGT GGAGATCAGA
  GGTCCATCAT CAGATCATTC CAGTCAAAGG AGCTCCCTGC TACTTGAGTG CATCTAGCTA
  AACATCTCCT CTTAACTGTG AGGGTGGCTC CACAGCTCAG TTGAGAATCT CAGTTGGAGG
  R
  AAATTTTACC ATCCCATTGT GGACCCCTGA GTGATCACCA TAGGCACACA GACCTCTCCT
  GGATTCAGAG CCTAGTGTGG GCTCTCTCTC TCTTTCTCTC TCTCTCTCTC TCTCTCTCTC
  TCTCCCTCTC TCCATTATTA TTCTTACTGT GTGTGCATGC AAGTGCACAT GCCATGGCCC
  ACATGTGGAG GTCAGAGAAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	C3H/HeJ	DBA/2J	MOLF/EiJ	NZW/LacJ	WSB/EiJ
ss49568744	NES12892302	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	C3H/HeJ	DBA/2J	MOLF/EiJ	NZW/LacJ	WSB/EiJ
rs29799768					SNP	G	G	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49568744	NES12892302	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:27335848 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13020	CpG island 13020	1788 bp proximal
Gm42192	predicted gene, 42192	within coordinates
Rr574384	regulatory region 574384	1556 bp distal
Rr574385	regulatory region 574385	923 bp distal
Rr574386	regulatory region 574386	1169 bp proximal