rs29799017 SNP Detail

Summary

• ID
  rs29799017
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:30504968 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTACTACAAC CAAGGGTCTC
  CCAAACTGTA GAAGTTTAAA CGGGCGAGGA ATGTGTTTGT TTCTTGTGTG ACAGCCTAGA
  ATTATGCAGG CAATGCAGGG AGGCAGCCCT GCTCTGCAAG GTCATTCAAG GTTCCAAGTC
  CCTTCTGTCC TGTGGTCCTG CCACTTCCTG GGTGTAGCAT ACAGTGAAAG CTGACTCTCC
  R
  CTAACAGTCT CCGTTCACAC CCATGGGAAG AGTGAGGAGG AAAAGGATGA ACAGGTAAGT
  GTAAGTGGCA GAGAATTTAA GCACAACACT GAACACATAC GATTGCTTCA GATCCTGAGT
  AGCCACAAAA AAATGTTAAT GGTGTGTCTA ACTCTAACTC CAGTAAAAGG TTAGATACAC
  AGCCCATGAT GACCATTTGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49569033	NES12860329	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29799017					SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49569033	NES12860329	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:30504968 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Mecom	MDS1 and EVI1 complex locus			Intron
				Noncoding-Transcript-Variant
Rr574763	regulatory region 574763			1850 bp distal
Rr574764	regulatory region 574764			1939 bp distal
Rr574765	regulatory region 574765			within coordinates
Rr574766	regulatory region 574766			1773 bp proximal