rs29799015 SNP Detail

Summary

• ID
  rs29799015
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:30505044 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGAATTATG CAGGCAATGC
  AGGGAGGCAG CCCTGCTCTG CAAGGTCATT CAAGGTTCCA AGTCCCTTCT GTCCTGTGGT
  CCTGCCACTT CCTGGGTGTA GCATACAGTG AAAGCTGACT CTCCACTAAC AGTCTCCGTT
  CACACCCATG GGAAGAGTGA GGAGGAAAAG GATGAACAGG TAAGTGTAAG TGGCAGAGAA
  Y
  TTAAGCACAA CACTGAACAC ATACGATTGC TTCAGATCCT GAGTAGCCAC AAAAAAATGT
  TAATGGTGTG TCTAACTCTA ACTCCAGTAA AAGGTTAGAT ACACAGCCCA TGATGACCAT
  TTGACTCGAA GTATAAAAGG AGAGAAAAAT AAACTCCAAG AGACAATGTG GAGCCTGCCA
  TCTCAAGTCT TCCCAGCAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49569031	NES12860331	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29799015					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49569031	NES12860331	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:30505044 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Mecom	MDS1 and EVI1 complex locus			Intron
				Noncoding-Transcript-Variant
Rr574763	regulatory region 574763			1926 bp distal
Rr574765	regulatory region 574765			3 bp distal
Rr574766	regulatory region 574766			1697 bp proximal