rs29798603 SNP Detail

Summary

• ID
  rs29798603
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:27526462 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAATATAGA CCGCTGAAAC
  ACATTTCAGG TGACATGTAA TTAAGAAGAA ACACACTAGA GCAGACAGAC TAAACATAAA
  CACGCAGTAT CCACCCAGCA GTGTAAATCC CATTTATAAT CCAGCTCCCC GTCTCCTCCC
  CAGCCAGGAG GGCACTGTCT CAATGGAAGC CCTGATGATC TGTAAGATTT AAAGCTCACT
  Y
  TGCCAAGGGT TCAGACACCT TGAGGTGCAG GGTGGACGGG TGGAGGTAAG AGCACGCACG
  TCCCAGCATG ACAGAGCAAA GCCACTGTGT GGCTGGTACA CTGGTGACTG GCACCGGCTT
  TCACCTTGGA TGCGTGGATT GATACAGTAG ATCTACTCAT GGGGATGCTG CCTCTGTGTA
  CATCAGCAGT TCTGGCCAGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss49568039	NES12885936	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	T	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs29798603					SNP	C	C	C	T	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49568039	NES12885936	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:27526462 () rs orientation: forward

Symbol	Name	Function Class
Fndc3b	fibronectin type III domain containing 3B	Intron
Rr374723	regulatory region 374723	1332 bp upstream
Rr574421	regulatory region 574421	717 bp proximal
Rr574422	regulatory region 574422	1637 bp proximal