rs29798602 SNP Detail

Summary

• ID
  rs29798602
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:27526872 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACTACATGT GCATCCTGTG
  TGCTCACAGT CAGTCATCTT AGCAGCAGTG AGATCTGCCT GCCTTCCTCC CCTGTTTGTG
  AACCCAGAGC AAACAGGCTG AAAAAGGCAC ACCCTGCCCT TGAGTTGCTT TCCCTTCCAC
  GCCTGTGTGG GTTCCCCTCA GAGCCTCATT TCTCCTGTGC CTATATTTGG CCTCCGTTGC
  Y
  CATTTCTGGT ACTTAGAACT ATAGCCAGTA AATACAAGTC GGCCTCTTCC TTACTAGTTG
  ATTTGCTTCA CTGTGCAAGA GCCATTCCGT TTACAACGTT AAGGGTAGTT AATCACCAGA
  AGGTAGATTT CTCTTTTCAA GGTATCACTA GAGAGCTGGA GATGGAAATG CCCCAGATCC
  CGCACGGCAT TTGCCCTGAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss49568038	NES12885937	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	T	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs29798602					SNP	C	C	C	T	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49568038	NES12885937	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:27526872 () rs orientation: forward

Symbol	Name	Function Class
Fndc3b	fibronectin type III domain containing 3B	Intron
Rr374723	regulatory region 374723	922 bp upstream
Rr574421	regulatory region 574421	307 bp proximal
Rr574422	regulatory region 574422	1227 bp proximal