rs29798601 SNP Detail

Summary

• ID
  rs29798601
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:27528707 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCAGATGAA CTCAGAGTGA
  GCCGTGGAAA CAAGCAGGGG CATGCCCAAG TTTATGAACG GAAGCAAGCC AGTGAACCTG
  AAAGGCCGCC TTTCTTTTTG ACTCACAGGC TCTGGCAGTG GAGTCGGGTC AGAACATGGC
  AAGGGTTATT TCAGTTCATG TCAAAGTAGG TCAGTAGCCT CGGAGCCAGG TCTGCCTCAA
  W
  GTGGCCAGGG GTGTAGGCCT GGCTCCTTGT ATTCATTTCT CCAGTCGGGA TAAACTTATC
  TTTCATTTTT CTACTAAGAG TAGGACAGAG CCTGTCTTCA CATCTGCTGC TCCAGATTGC
  TTGTGTTTGG CATAGCTGGT GCACCATGCC ACAGTCCGGG TGCTGCCGAG GACTCTGCCG
  AGGACTCTGC TAGAATCTCC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss45406652	mCV24784055	ABI	CRAMUS_MOUSE	r	SNP	A	T
ss49568037	NES12885935	PERLEGEN	MM_PANEL2	f	SNP	T	A	A	T	T	A	A	T	T	T	T	T	T
ss134704520	ENSMUSSNP5381527	ENSEMBL	ENSEMBL_Sanger	f	SNP		A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs29798601					SNP	T	A	A	T	T	A	A	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49568037	NES12885935	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:27528707 () rs orientation: forward

Symbol	Name	Function Class
Fndc3b	fibronectin type III domain containing 3B	Intron
Rr374723	regulatory region 374723	within coordinates
Rr574421	regulatory region 574421	1507 bp distal
Rr574422	regulatory region 574422	within coordinates