rs29798402 SNP Detail

Summary

• ID
  rs29798402
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:27391634 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCACAGCTA CCACTTGAAT
  ATAAGCACTT GAATACCTCC TCTCACTAGA ATACAACATA GCTTAATAGT AAAAATCTTG
  CCTTAGTAAA GTACTTGCAT GTCATGTCTA CATGAACCAA ATGAATGTAT TAATTAATAA
  TAGACATAAT GATCACATCG GAAAGGCTGT GAGAAATAAT GGAGAACATT TGAAAGCTCA
  R
  GATGGAAGGG AAAGGCACTT GTCAAAAATC TTGACAACCT GAATTTGACC TTTGGCAGGG
  CTGAAAACTA AACCCAGGGT CTTACTCCCA GTAGGCATGA ACCCCCACAC TGAGCGGCAC
  CACAGCCCTA AGGTTTTAAA TGGCAGAAAC AACTGAGCGC TTTTCTAATT CCTGGTCCCC
  AAGTCATCAC TGATGGCAAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45471784	mCV24740016	ABI	CRAMUS_MOUSE	f	SNP		G				A
ss49568543	NES12890030	PERLEGEN	MM_PANEL2	f	SNP	A	G	G	A	G		A	A	A	A	A	A	A	A	A
ss134703984	ENSMUSSNP5173491	ENSEMBL	ENSEMBL_Sanger	f	SNP		G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29798402					SNP	A	G	G	A	G	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49568543	NES12890030	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:27391634 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr574397	regulatory region 574397			1024 bp proximal
Rr574398	regulatory region 574398			1159 bp proximal
Tnfsf10	tumor necrosis factor (ligand) superfamily, member 10			Intron
				mRNA-UTR