rs29798398 SNP Detail

Summary

• ID
  rs29798398
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:27392466 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTAGCAGGC AGCCTGCAGG
  ACACATCTTT GCCAAAATGT CAAATGCTGT GACTTATAAA TTAAATATTT AAGAATGCAG
  CATACCCAGA GAAATCATTA GATGTTCAAA GATTTAATTC GTGTGCAACA TTAAATGCCA
  TGACTTGTTT AAACAAGCAC ACCTAAATAT TCTTTCTTCT GCTAGAATCT GAAGCCTGTG
  R
  TGCAGGAAGC AAGAATGGAG AGAATATTCT AGAATAAGAA CTTTCTGGGC GATTGTGAGC
  CCTTTAATAA AAGGCATGAA TACTTATCTG TTTGAAAGAG AAATCAATTT GGGGTGGGGG
  CGGGGGTTGT CCTTTCTTTG CTGAGTTCTA GCCCAACAAG CCATCTGACT TGAAGACTAA
  GACGAGCCTG CCACCTGGGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45412368	mCV24740022	ABI	CRAMUS_MOUSE	f	SNP		G				A		A
ss49568539	NES12890005	PERLEGEN	MM_PANEL2	f	SNP	A	G	G	A	G		G	A	A	A	A	A	A	A	A
ss134703990	ENSMUSSNP951934	ENSEMBL	ENSEMBL_Sanger	f	SNP		G						A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29798398					SNP	A	G	G	A	G	A	G	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49568539	NES12890005	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:27392466 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr574397	regulatory region 574397			192 bp proximal
Rr574398	regulatory region 574398			327 bp proximal
Tnfsf10	tumor necrosis factor (ligand) superfamily, member 10			Intron
				mRNA-UTR