rs29798395 SNP Detail

Summary

• ID
  rs29798395
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:27392874 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGACAATGA TCCCAGGGCA
  GAGGCCAGCT CTGCTGTTTT GAGAAGTGTC TAGGCAAAAG CTTTCTTTCT TTTTTTTTTT
  TTTTCAGACC AAAAGGGGCC TCTTTAATGT CACACACCAT TAGTGCCACC AGGTGGCGAG
  GTTCCCTTAA TTTCTTCAGT ATCAAGTCTT TTAAAAGTGT ATGAGTATAA ACATCTTCAA
  W
  TTCTCGGGTT TAAAAACAAA ATCAAAAATG AAAAAAGGTC GCTTACCTTT AGACCATAGG
  CAACTGGAGC TAAAGACAAG AGATAAGCTG GTGTACCCCG ATGGAGCAGC AGGCTTTAAC
  TGAATCTGTG AGGAACAGGG TGGGGCTTCA CATGGTAAAA CTGAATCTGA GGTGTGTTCT
  TTTGCCTGTT TGGGTTGTTG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49568536	NES12890008	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	T	A	A	T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29798395					SNP	A	A	A	A	A	A	A	A	A	T	A	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49568536	NES12890008	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:27392874 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr574397	regulatory region 574397			within coordinates
Rr574398	regulatory region 574398			58 bp distal
Tnfsf10	tumor necrosis factor (ligand) superfamily, member 10			Intron
				mRNA-UTR