rs29798394 SNP Detail

Summary

• ID
  rs29798394
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:27393003 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGGTGGCGA GGTTCCCTTA
  ATTTCTTCAG TATCAAGTCT TTTAAAAGTG TATGAGTATA AACATCTTCA AATTCTCGGG
  TTTAAAAACA AAATCAAAAA TGAAAAAAGG TCGCTTACCT TTAGACCATA GGCAACTGGA
  GCTAAAGACA AGAGATAAGC TGGTGTACCC CGATGGAGCA GCAGGCTTTA ACTGAATCTG
  Y
  GAGGAACAGG GTGGGGCTTC ACATGGTAAA ACTGAATCTG AGGTGTGTTC TTTTGCCTGT
  TTGGGTTGTT GCTGTTGTTA CTGCTTTGTT TTGTTTTTTT GTTTTTAAGT GAAACAGAAT
  TTAAGTCTTT TGGAAGACTT TTGTAAATTC TCTTGGTCCC AAGGGAGGGC TCTGTGACGT
  CTGGAGTCTC AACAGTTTGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49568535	NES12890009	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29798394					SNP	T	T	T	T	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49568535	NES12890009	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:27393003 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr574397	regulatory region 574397			within coordinates
Rr574398	regulatory region 574398			187 bp distal
Tnfsf10	tumor necrosis factor (ligand) superfamily, member 10			Intron
				mRNA-UTR