rs29797461 SNP Detail

Summary

• ID
  rs29797461
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:27393674 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTAGTTTTC TTTCAAGTAT
  TGTTTTACCT ATTTATCATA TTTATCACTT TCATTATCAA TGTTAGAAAT TTTGTTTAGC
  CAGCCTTTTT ACTTATTCTT GAAATAAAGG GTTAAATAGA TATTTTTTCA GTTGTGAGAC
  ATGAAAATCT TAGAAAGAAT TTTTCTTTTC TTTTTCCTTT CATTTTAATA GCAGTGAATC
  Y
  AGAAAGAGAA TTATTTTTCA TGGTGATTAT TTCAAATGTA TTGATACCAT TTTGTGGGCT
  GGGAAATGTT AAACTTTGTA AACTCTGAAA CGCACAAAGT GTTGCTTTGA ATTTCACCTT
  AATAAAAATA ACATCAAGTA TATGCAGTGC ACTTTCCTCT CCCCCTCCCC CTCCAGCTCT
  GCAAGGTACA GTCATCTTTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45389605	mCV24740029	ABI	CRAMUS_MOUSE	f	SNP		C				T		T
ss49568532	NES12889917	PERLEGEN	MM_PANEL2	f	SNP	T	C	C	T	C		T	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29797461					SNP	T	C	C	T	C	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49568532	NES12889917	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:27393674 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr574397	regulatory region 574397			616 bp distal
Rr574398	regulatory region 574398			858 bp distal
Tnfsf10	tumor necrosis factor (ligand) superfamily, member 10			Intron
				mRNA-UTR