rs29794331 SNP Detail

Summary

• ID
  rs29794331
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:29793839 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGCCACTAG AGGGCAGAGG
  CTCCCTCACT CATTGTATGT TTGGATGAAG ATTTAAAAAG AAATTGAAAA GTAACATCAT
  TCTTCGCCCC GCCCCCCCGC CCTTAAGCCC AGTTTTTAAT GTATCATACA GGCACATACA
  TATTGCAAAA ATATTATAAG AAAACGATGA AAGTATTTTA AATGATAATT CCAGAATTGT
  R
  TGCCAAAAGA GTAGCATCTC TGGCGTGTTC TCCTCCTAAG CCCCAGACAC AGCCAGTGTT
  AAAATGTATA ATATCACCCA CCCTCCAGAT CCAAGCGCAG GACACTTTCA CATAAATATG
  ACTTACAAAA CACTCCGTGT TACGTGTTCA CTCATTCAGT TATGCACACA TGTGATATCA
  GTCTGCCAAG ACCTGCCTTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45544911	mCV24261943	ABI	CRAMUS_MOUSE	f	SNP		G					A		A
ss46882621	NES10833265	PERLEGEN	MM_PANEL2	f	SNP	A	G	A	A	A	G		A	A	A	A	G	A	A	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29794331					SNP	A	G	A	A	A	G	A	A	A	A	A	G	A	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46882621	NES10833265	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:29793839 () rs orientation: forward

Symbol	Name	Function Class
Gm65548	predicted gene, 65548	within coordinates
Rr574683	regulatory region 574683	106 bp distal
Rr574684	regulatory region 574684	180 bp distal