rs29790387 SNP Detail

Summary

• ID
  rs29790387
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:29782585 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAGTTTACA ATGGAACACT
  CTGTTTATGG TGTGGGCTCA ATTTTAAGTA CATGTCTAAT TAGGGGAATG GAGGGTAATT
  GTCACTTAAG TTTGTTGACT GACTCTAAAC TTTATTTTTT TTCCCTGATG GAGAGCTAGT
  AAATGTCATG GGAAACAATG TAGCATCCAT TATTGATGCA GGGCTTCTGT TGGAGCAATT
  K
  ATATTAACAT ATTTCCATGA CTCTGTGTAA ATACCTGTTT GCAGAGCGCA GAAATCCAGC
  ATCACCTGAC AGGGAGAAAT TATCTTCCTT AGCTATGAAC TTGCCTTAAT TGCAGCTGGA
  GTCGGAGTAA AGAATCCAAA AGCACATCTC CACAGTGTGA TAACGGAGAA GAAAAATGCT
  CCATCTTTCT AATGTGGTAC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46882387	NES10801305	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	G	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29790387					SNP	T	T	T	T	G	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46882387	NES10801305	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:29782585 () rs orientation: forward

Symbol	Name	Function Class
Gm65548	predicted gene, 65548	within coordinates
Rr574679	regulatory region 574679	1530 bp distal
Rr574680	regulatory region 574680	1639 bp distal
Rr574681	regulatory region 574681	1719 bp proximal