rs29790020 SNP Detail

Summary

• ID
  rs29790020
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:29795414 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTCTACACA GGAGTCATTA
  CAGGAAGACA TTCTCAGCTG CCCTGTTGGT TGAACTAACA AAATATGATG AGCGCTTGTG
  GAGAGGGATC TTAAGAGATT CAAAGGGAAA CTGAGAGAAA GTAGAGCAGG GCCTGAGCCT
  TTGCAGGCTG CCTCGTGTGC TCATATGAAA AGACTGGCTA TTTGGCTTAG CAACATAGGG
  W
  TGCAGACTAA GGACAGAGAG GGCATCATTA CCTGTTTATT ATGGCACTCT ATGTCTTTTT
  CCGTGCATGT TGGTGTCATT CTTCTGTTTA TTGTCACAAA TACTTCAGGC TTTACGAGAA
  AGTGTTTTAA ATCCACATCC TAGCTTTTAT GGGTAGAGGG TTGTGTTGTT CATCTCTGCC
  TGAAGCAGCC CCTTCCTACT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46882672	NES10833282	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	A	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29790020					SNP	T	T	T	T	T	T	T	A	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46882672	NES10833282	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:29795414 () rs orientation: forward

Symbol	Name	Function Class
Gm65548	predicted gene, 65548	within coordinates
Rr574683	regulatory region 574683	1681 bp distal
Rr574684	regulatory region 574684	1755 bp distal