rs29789583 SNP Detail

Summary

• ID
  rs29789583
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:109686691 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTCCTGTTC AATCCAACGA
  GCACAGAAAC TGCCACTGAT ATTTGACTTA GAAATAAACA CTAGGTAAAG TCCAACAGAC
  CATTTCCCAG GGTCAAGAGC ATCCTATTTG TGATCATGGG GTTTTTATAT TCCTAGATGA
  CTAGAGTATT GGTGGTAGAG GAGGAAGAAG ATGGAAGTAA AGATCTGATT TCAGGGTTTC
  Y
  ATCTAAAGAT TCTTAGAGGC CAGTTAAGTC ACAGGTCCAG GAAAGGGTGG ATAAGACACA
  ATACAAACCA CTGAACTGTG GAATCTATAT CTTCTTCAGT CTATGTGCTC AAGTGTTGCC
  TTTGTGCTGC CTGCCTACAG GAGGCCAGCG TCCTGTGGGG ACATCTAATT AGACTGGATA
  ACTGGGCCAA GGCAGAGGAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss46881576	NES10695536	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs29789583					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46881576	NES10695536	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:109686691 () rs orientation: forward

Symbol	Name	Function Class
Ntng1	netrin G1	665 bp downstream
Rr583444	regulatory region 583444	1663 bp proximal