rs29788042 SNP Detail

Summary

• ID
  rs29788042
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:29794884 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTTTTCTTT GATCACTAGT
  TTACCACACT TCAAGAAACA TCTTGATGCT TCAAATCTGA ATTTTCTTTA CCTTGTTCAG
  CCTGTTTCTC TGTCTCTCAA AAGAGGCTGT CACCATTTGA CCATGCTTTC CTTACTATTC
  TAAAAGACAA CTCAAGCCTT TTGCTTTGAT TTTTTTCAGG AGCAACAAGA AAAATGGCCA
  Y
  AATACAAATG ACAAGTATAT TTTCCCTAAC AAAGCATTTT ATTATCCAGT CATCTACCCA
  CCCAAATTTG CAGGCTGCAA GCAACATGAC AAAAGTTGGT TAGGCTGTAA CAGCTTCGAC
  ATTTTTCTTT AGAAAAGCAT TCTTTTTTTT TTTTTTTTTT TTGAGCGCCA TATATATCCT
  ACATGACCCA AAATTATCCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46882654	NES10833276	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29788042					SNP	T	T	T	T	T	T	C	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46882654	NES10833276	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:29794884 () rs orientation: forward

Symbol	Name	Function Class
Gm65548	predicted gene, 65548	within coordinates
Rr574683	regulatory region 574683	1151 bp distal
Rr574684	regulatory region 574684	1225 bp distal