rs29788034 SNP Detail

Summary

• ID
  rs29788034
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:29794559 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACTATCACT GTACTGGTTC
  TGAAAGTTCC TAAACCTTCA GAAATTAACA ACTACTGAAC TTGCTATTCT GGATAATTGT
  GTTAACTTGC AAAAAAAAAA ATTTTGTTTT ACAAATTTTA CCATATCATG CAAGTAGGAT
  GACTAAAAAT ATTCCGTCAG GCAAAGGACC TGACTGCTGT AAGCCAGTAA TAATCCACCC
  R
  TGTGTGTATC TAAGCAAATG CTCACCGTGT TCCCTAACAC CATCAGCTAA AAGTGTTTAT
  TGTAAAAACC ATAAAGCAAG ATAGTAAGAC ACCATTTCAG GCTGCAGGCG AGACAATTCC
  TATGGCTTTT CTTTGATCAC TAGTTTACCA CACTTCAAGA AACATCTTGA TGCTTCAAAT
  CTGAATTTTC TTTACCTTGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46882645	NES10833273	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29788034					SNP	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46882645	NES10833273	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:29794559 () rs orientation: forward

Symbol	Name	Function Class
Gm65548	predicted gene, 65548	within coordinates
Rr574683	regulatory region 574683	826 bp distal
Rr574684	regulatory region 574684	900 bp distal