rs29782401 SNP Detail

Summary

• ID
  rs29782401
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:77653449 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  AAGAATTGAA TTCTATGAAT TAGTTCAGCC CTTAGAAGTA GTCTAACACA GAAAAATATG
  CAAAAACAAA GAACAAAATC CCACCCTAAA TCCATAATGA AAAAAATCAA TGTTTTCTTA
  CCAAGTTTAT GGACAAGGAA TTTAAAAGCT ATAGTGGGGC GTGTTTTTCA TCTCAGGACT
  CAGGAGGCAG AGGGAGGAGG AGCTCTGTGA GTTCGAGGCC AGCTTGGTCT ATATAGTGAG
  TTCCAGGGCA TCCAGACCTA CACAGAGAAA CCCTGTTCCG AAAACAAAAA AAAAAAAAAA
  M
  AAAAAAAAAC AAACAAAACA AACAAAAAAA AAAACCCATA CCATAAAATC AGACGCTTAG
  TGCAAGGTAA AGGTGTATTG TGGATATATG AGACATATTC ATTCCTTTCC CTCTCTCTCC
  TTTACCCTTC TGGCTAACCA CTCTGCAAGC TATAGGTCCT ATTCAAATGT CAACAGCTAC
  TGTGTGTAAG CTTTGTTTTG TTTCTGGCAA GGTGAGGAAA GTGGAATGAA CTTGGACTTT
  GAAGGCAAAT AGACTGGATT AAATTCTGCC TCTGTTTATT ACTGTGCCTT GTTAGGGCCC
                                                                   
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J
ss46339333	mCV25041311	ABI	CRAMUS_MOUSE	f	SNP	C	C	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J
rs29782401					SNP	C	C	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:77653449 () rs orientation: forward

Symbol	Name	Function Class
Gm69150	predicted gene, 69150	1150 bp upstream
Rr383635	regulatory region 383635	560 bp downstream
Rr683403	regulatory region 683403	1161 bp distal
Rr683404	regulatory region 683404	955 bp distal
Rr683405	regulatory region 683405	156 bp proximal