rs29773459 SNP Detail

Summary

• ID
  rs29773459
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr18:65810822 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  GCTGAAATAA TACAGTGGTG AATAGAACAT CAGTTCTGGC CTGCTTATGC AATGAATCCT
  CCAAAGTTTC TCTCAACACA TACTGTATAT ATTACAAGTA AAAATACCCA GTTTTATAAA
  TATAGGTAAA AATGAATATC TATATTCAGA AAAGAAGTGT TATGAAATAA AGCTTTAGAT
  TTGACCAGCG TTCGATGGAT GAGGTTAGAA GCAATCATTA GTCTATTTTG AAGTCAGCAT
  TTATTTTTAA CTTTTACATT TAGCAGGGCG TGTGTGTGTG TGTGTGTGTG TGTGTGTGTG
  Y
  GTGCGTGCGC GCGCGCGCCA TGGTGTGGGA GTGGACAACT TGTGGAAGTT GGTTCTCTCC
  ATTTCAAACT CAGCTCATTA GGCTTGGCAG CAGAAACATT TACTCACTGC CTTGTTACAT
  TTATCTGTCT GTCTGTCTGT CTGTCTGTCT GTCTGTCTGT TTATGAGACA GACTCAGAAT
  CATGGGGATG GGTGTTTCAC TTGGGGATTG GAGGATGGGT GGTGTAAGCT TCAGGTGGCC
  TGGAGGATCT GCCCCCTCTG TCTAATCCAA TCAGCCTCCT GCTTATCAGC TCACCCAGCG
                                                                   
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss39614868	mCV23468282	ABI	CRAMUS_MOUSE	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs29773459					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:65810822 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
D18Mit161	DNA segment, Chr 18, Massachusetts Institute of Technology 161			within coordinates
Rr539588	regulatory region 539588			1492 bp proximal
Zfp532	zinc finger protein 532			Intron
				Noncoding-Transcript-Variant