rs29772154 SNP Detail

Summary

• ID
  rs29772154
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:152662747 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCCAGGCCA GCTCCCATTC
  TTCAGATGAC TGTCCAACAA GGTTCGCAAC CTTCCAGCTT CCTCCTGAAA GGTGACTAGG
  GAAGGGATGG CCAGCTCTGT CACTCCAACC AGTCATCAAT CTCCAAGAAG CAGGGTTTTA
  AGTGCAGAAC CTTGGATACT TCCCTTAGGA TCCTCTGTCC TATGCCCGAA TGGATGGGTC
  R
  GAACCCAAGG GAGAAATCAG TTCATGGATG ACACAGGGCA CTCCCAAGTG ACAGGTCTAA
  TGCCCCTCTA GGGGAGAGTT TATAACTGAT GGAGCCAGGG ACAATGGCCG GGAGTTTTTT
  CCAACTGACC ACACAGTCTA GCATCAGAGG CAGACCTACT AGAAAGGCAT TCCCAGTTCT
  AAAGGGAAGA GTACAGACTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45361564	mCV27575800	ABI	CRAMUS_MOUSE	f	SNP	A	G	A	A
ss147974956	ENSMUSSNP4563804	ENSEMBL	ENSEMBL_Sanger	f	SNP		G		A
ss320563510	CHEV_2_152646563	CHEVERUD	SCREENING_POP	f	SNP					G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29772154					SNP	A	G	A	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:152662747 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Bcl2l1	BCL2-like 1			Intron
				Noncoding-Transcript-Variant
Rr374094	regulatory region 374094			within coordinates
Rr567481	regulatory region 567481			1813 bp distal
Rr567482	regulatory region 567482			within coordinates
Tssr20836	transcription start site region 20836			441 bp upstream