rs29769129 SNP Detail

Summary

• ID
  rs29769129
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr18:69763834 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGAAA CAAAAATATA GGTCATTTGC
  Y
  GTAAAATGAC ACGATGTGAG AAAAT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
ss39612876	mCV22676817	ABI	CRAMUS_MOUSE	f	SNP	C	C	T	C
ss147387972	ENSMUSSNP4513749	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T
ss325671472	CHEV_18_69790417	CHEVERUD	SCREENING_POP	f	SNP					T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
rs29769129					SNP	C	C	T	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:69763834 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr540232	regulatory region 540232			23 bp distal
Rr540233	regulatory region 540233			912 bp proximal
Rr540234	regulatory region 540234			1290 bp proximal
Tcf4	transcription factor 4			Intron
				Noncoding-Transcript-Variant