rs29768013 SNP Detail

Summary

• ID
  rs29768013
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:127966189 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AAGAGCCTCC GCCTCCAGGC CGGCTTCCTA ATTAGGACCT
  AAAAAAGAGC ACATAGCCCA ACCCGTTGCT TTCCCCAGTG CCTGTATATT TTCTTTTAGC
  R
  TGTCCAGGGT TGCAGAATCG GAAGACTCCA GAGCAGCCTG CTCCTACAAA GAAACACCAG
  CGCTTCCCCA CCCCCACCTC CCACCCCTGT ATGGTTCTT                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45362115	mCV22674886	ABI	CRAMUS_MOUSE	f	SNP	A	A	A	A	G
ss147552328	ENSMUSSNP1030723	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A		G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29768013					SNP	A	A	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:127966189 () rs orientation: forward

Symbol	Name	Function Class
Acoxl	acyl-Coenzyme A oxidase-like	mRNA-UTR
Bcl2l11	BCL2 like 11	1769 bp upstream
Cpgi12233	CpG island 12233	1052 bp distal
Cpgi12234	CpG island 12234	313 bp distal
Cpgi12235	CpG island 12235	759 bp proximal
Gm74510	predicted gene, 74510	1948 bp upstream
Gm75592	predicted gene, 75592	within coordinates
Rr564648	regulatory region 564648	within coordinates
Rr564649	regulatory region 564649	1650 bp distal
Rr564650	regulatory region 564650	966 bp distal
Rr564651	regulatory region 564651	1279 bp proximal
Rr564652	regulatory region 564652	1884 bp proximal
Rr564653	regulatory region 564653	1959 bp proximal
Tssr20042	transcription start site region 20042	1761 bp upstream