rs29767544 SNP Detail

Summary

• ID
  rs29767544
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:109511914 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGTCCAGCC CATATCCGAT
  GCATGAGTTC ATGCTGGCTT GCTCTCTTTC AACCCTCTGG AATTTCATCC TGGTTTTGGA
  TTCCTGGATA CTTGTTTACC TTGGTAGATA GTGTTTGCCT ATCTTAAGTG AGCTATGATG
  GCATTTGCTC CCAGCATATT TCTGCAGAAA ATTAACAGTC ATAATTTTAT TCCATATGTA
  Y
  TAAATATTAA TCAATTATGA GTCCCAAACT ATGTCAGAAT TTGAAGATTC AGCCATGAGC
  AAGACTGAAT GATCCTTATC TTGCCAGAAC CTATAGGCTG GTGACAAAAT CTGACCCCTT
  AAAGACATCT GGATTTGTAC TTTCTTCAAG AAAACACAGT GACTTGGGTT CAAAGACATA
  GTTCAAGCTT TATCCTCAAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J
ss45360623	mCV23782109	ABI	CRAMUS_MOUSE	f	SNP	C	T	T
ss147203264	ENSMUSSNP1984359	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J
rs29767544					SNP	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:109511914 () rs orientation: forward

Symbol	Name	Function Class
Bdnf	brain derived neurotrophic factor	Intron