rs29765980 SNP Detail

Summary

• ID
  rs29765980
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:16871541 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCTTAGAAT TGATGTTCTT
  TTTAAAAGAC AAAATGTATT TTAGCATCTA TAAATAAGAA AGTAGGCAAA TTGGAGATAA
  TCTGTGCTTT AAAGTACTAT TAATATTACC CCAATTGGAT ATATTTTTTA AAAAGAGAGG
  GAGCGATTGT ATGTATTCTC TTGCAGAGGC TTTCTATCTC TGCCATTGGA GAATAGCTGA
  K
  TGTTGTTATA AACAAATGTA TTATGTATAT AAAATGAAGC TAAATATTTA ATATGCAGAA
  TATATGTTTG TATGCATGCA CAATGCAAAA CCGTTTCTAA GATATTTTAC AAAGAGAAAT
  GATAGTGTTT TAAAAGGTGG GGCACAGAAG CACTAGAATA AGCTAAAATG AATTGTATAC
  TTCTTTGTGC TAGGCCAGGT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49566106	NES12908652	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	G	T	T	T	G	T	T	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29765980					SNP	T	T	T	T	T	T	G	T	T	T	G	T	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49566106	NES12908652	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:16871541 () rs orientation: forward

Symbol	Name	Function Class
Gm30223	predicted gene, 30223	within coordinates
Rr573801	regulatory region 573801	281 bp distal
Rr573802	regulatory region 573802	within coordinates
Rr573803	regulatory region 573803	1798 bp proximal