rs29765493 SNP Detail

Summary

• ID
  rs29765493
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:16872911 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAATGAAATA TTTTTTGAGG
  GGAACACAGA TTTTGAATTT CTTAATTAAG GTTCAATAGC TGCAAACATC TTCAGCTTCA
  AGAGACTGCT ATTTTTCTGT TGTTAATTTT CACATGTATT TGTGAAATCT CTAAGTGAAA
  AGTCTTCCAG AACACTCTCC TCTTTTTATG TTGTATTACT TTACTTGGCT TATATTTTAC
  R
  CACTAATATT AAGATTAAAG ACAAAGCACT GTACCTTTAA GTCATAACCC AAGAGTACAA
  AGAGAAAGAC ACTCATGGTG CTGATCTACC CAGCATCTTC CTAAAACAAT TGCCCCCATT
  TTATTTGTCA TAGAATCCAG GCAATAACTA ATGTTTTGCT TATTATTTTT ACTCAGAAAA
  GATTGCATTC ATAACCATAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49566099	NES12908664	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29765493					SNP	G	G	G	G	G	G	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49566099	NES12908664	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:16872911 () rs orientation: forward

Symbol	Name	Function Class
Gm30223	predicted gene, 30223	within coordinates
Rr573801	regulatory region 573801	1651 bp distal
Rr573802	regulatory region 573802	1166 bp distal
Rr573803	regulatory region 573803	428 bp proximal