rs29765492 SNP Detail

Summary

• ID
  rs29765492
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:16872959 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGTTCAATA GCTGCAAACA
  TCTTCAGCTT CAAGAGACTG CTATTTTTCT GTTGTTAATT TTCACATGTA TTTGTGAAAT
  CTCTAAGTGA AAAGTCTTCC AGAACACTCT CCTCTTTTTA TGTTGTATTA CTTTACTTGG
  CTTATATTTT ACGCACTAAT ATTAAGATTA AAGACAAAGC ACTGTACCTT TAAGTCATAA
  Y
  CCAAGAGTAC AAAGAGAAAG ACACTCATGG TGCTGATCTA CCCAGCATCT TCCTAAAACA
  ATTGCCCCCA TTTTATTTGT CATAGAATCC AGGCAATAAC TAATGTTTTG CTTATTATTT
  TTACTCAGAA AAGATTGCAT TCATAACCAT ATAAAATGCT GAATAAGAAT AATGTGGTTT
  TGTCCTGAAC TCAATTTTGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss49566098	NES12908665	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C		T	C	C	T		T
ss320672592	CHEV_3_16718795	CHEVERUD	SCREENING_POP	f	SNP											C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs29765492					SNP	C	C	C	C	C	C	T	C	C	C	C	T	C	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49566098	NES12908665	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:16872959 () rs orientation: forward

Symbol	Name	Function Class
Gm30223	predicted gene, 30223	within coordinates
Rr573801	regulatory region 573801	1699 bp distal
Rr573802	regulatory region 573802	1214 bp distal
Rr573803	regulatory region 573803	380 bp proximal