rs29765490 SNP Detail

Summary

• ID
  rs29765490
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:16874225 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGAAATAAT AGGCTACTCT
  GCTTGCTTCT TTCCTGCAAA GGAATGGAGT TGGTGTGGTG GTGGTGGTTT GTGTGTGTGT
  GTGTGTGTGT GTGTGTGTGT GTGTGTGTGT TTGCACAAGC ATACATGTGA GCACTTGTCT
  GTGTTCAATA AGGAATCTTG GGCAGAAATT TCTTCACTGT GTTCTTAAAG ATTATAGGGA
  Y
  GTTATCTGTA CACGTCTGGT ATGACAATAG TATTTCTAAG GAATAGGAAT GCAATCTTTC
  TTTTTCTTTT TCCTTTTTTG AATTATTTTT TCATCCACAC CCTTGATGGA CCTCATTGTG
  AATTATTGTG TTTTATTTTA ATGTCTACTT CTCATTTACT AGCACCTTTT TTGTTTTGTT
  TTGTTTTACA GCCCACTCTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49566096	NES12908668	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29765490					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49566096	NES12908668	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:16874225 () rs orientation: forward

Symbol	Name	Function Class
Gm30223	predicted gene, 30223	within coordinates
Rr573803	regulatory region 573803	within coordinates