rs29765489 SNP Detail

Summary

• ID
  rs29765489
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:16874235 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGCTACTCT GCTTGCTTCT
  TTCCTGCAAA GGAATGGAGT TGGTGTGGTG GTGGTGGTTT GTGTGTGTGT GTGTGTGTGT
  GTGTGTGTGT GTGTGTGTGT TTGCACAAGC ATACATGTGA GCACTTGTCT GTGTTCAATA
  AGGAATCTTG GGCAGAAATT TCTTCACTGT GTTCTTAAAG ATTATAGGGA CGTTATCTGT
  R
  CACGTCTGGT ATGACAATAG TATTTCTAAG GAATAGGAAT GCAATCTTTC TTTTTCTTTT
  TCCTTTTTTG AATTATTTTT TCATCCACAC CCTTGATGGA CCTCATTGTG AATTATTGTG
  TTTTATTTTA ATGTCTACTT CTCATTTACT AGCACCTTTT TTGTTTTGTT TTGTTTTACA
  GCCCACTCTC TAAGGCAGGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49566095	NES12908670	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29765489					SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49566095	NES12908670	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:16874235 () rs orientation: forward

Symbol	Name	Function Class
Gm30223	predicted gene, 30223	within coordinates
Rr573803	regulatory region 573803	within coordinates