rs29765484 SNP Detail

Summary

• ID
  rs29765484
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:16875733 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACGTCTCCCT TCACACAGGA
  GATATAATAT TATTGGGACA ATTCTTACTT GAAACACCTA TCTTTCATTT TGCAATAATT
  TTCTGAATTG TGGCTGAGTT TGATAACACT AAAATTTGAA AATACTAAAA ACTAGAAAGG
  GAAAATTAAG GGAAACTTAT AATTTAGCTT TGTTTTAATC CAAAGTAAAG TTAGAATATA
  Y
  CCTGAGTTCC AGAGTATGAC CAGAATCTCT TCTACATAAA ATTCTTAAGG CTTCTTCTGA
  CTAATGTTGA TATACATGTA CTATCTCTAA CTTAAGCAAA CTAAAGTTTG CTCATTTCAT
  TTTTTCCATT CACACACACA CACACACACA TACACACAAA GAAAATATAT TTCATTCACT
  CAGTAAATCT AAGAAATAAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49566090	NES12908677	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29765484					SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49566090	NES12908677	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:16875733 () rs orientation: forward

Symbol	Name	Function Class
Gm26485	predicted gene, 26485	1680 bp downstream
Gm30223	predicted gene, 30223	within coordinates
Rr573803	regulatory region 573803	599 bp distal