rs29764739 SNP Detail

Summary

• ID
  rs29764739
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:16877117 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAACACTGT AAGAGTTTTC
  CTTTCTTCAA AATGATTTTA TTTGAATTCC TGGTCTGAAA GGTACACTGC ATGGGAAATA
  TGGGGCAATG ACTTATCTAG GCTATCATAC GTGTACAGGT AGAATTAACC ATTTACCACC
  TCCTCAAGGT TTGAATAGAC AGAGTGACAG GTAGTTTCTC TGGGGTGATT TAATAGCTAC
  R
  ACAAATCCAA ACTCTCCCAC AGCTGATTCC CACAGGCACA GGACTGAAGT GAATGCCTGA
  AGTGTTTACT GCTGCACACT CACCATGTTC AGCCACATGG ATGTTATGGT TAATGTTGGT
  AATTTGGGAA AATTGTGCTA CACCCATCTT TCATTTAACA CTATAGGACA AACAGTAGTG
  AATTCCCACT TTTAGAGAAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss49566085	NES12908682	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	A	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs29764739					SNP	G	G	G	G	G	G	G	G	G	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49566085	NES12908682	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:16877117 () rs orientation: forward

Symbol	Name	Function Class
Gm26485	predicted gene, 26485	296 bp downstream
Gm30223	predicted gene, 30223	within coordinates
Rr573803	regulatory region 573803	1983 bp distal