rs29760124 SNP Detail

Summary

• ID
  rs29760124
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:16990840 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCTTCTTGG ACAATGCCTT
  TCTTTGCTTT CTATATCTGA CACATGGCTT CCAGGTAATT CTTCCCTAAG CACAGGCTGC
  ACTTAGAAAT GCACTCACTT ACTTGCTATT AACAACAGAA TGACTCTGAC ACTCTAGAGA
  TCAGTCCGTG TCCCCTGCTC CCCTCCATTT TATCTAACCA CATAAACCAT GCATTTCAAA
  Y
  AATCACATTA AAGAGATTTC GAGATAGTCT GCATCCTACT TTGTGAGGTA AACCTTGCTT
  AAAGGCACCT TTCAAATTCC TAGTATCCTC TTTTTTAAAA AATTTTAAAG ATTTATTTAT
  TTATTATGTG TAAGTACACT GTATCTGTCT TCAGACACCC TGGAATAAGG CAACAGATCT
  CATTATGGAT GGTTGTGAAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss45547380	mCV24700936	ABI	CRAMUS_MOUSE	f	SNP		T	C					C
ss49565740	NES12906726	PERLEGEN	MM_PANEL2	f	SNP	T		C	C	C	T	C		C	C	T	C	C	C
ss134647036	ENSMUSSNP745001	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs29760124					SNP	T	T	C	C	C	T	C	C	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49565740	NES12906726	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:16990840 () rs orientation: forward

Symbol	Name	Function Class
Rr573811	regulatory region 573811	1513 bp proximal