rs29759412 SNP Detail

Summary

• ID
  rs29759412
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:16365130 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAATGATATT TTTTAGGGTA
  TGAAAGGATA TGGATATAAA AGTTGAACAA ATTTTTGATG TGTTATTTGA TTCTCAACAT
  GCTCAATATT ATTAATATGT TTGATGTATA AAATTCTTAA ATAGTAAAAA AATTAAAAAA
  AAAGAAAAAA AACAATTGCT TGATTCTCTG CTCGTATTTA TTGCCATACA TTTGTCTGAA
  K
  TAGCACTTAT TTGTAGAATG CAAATGGTTT GGGAGCTACA GTTCTGAAGA GAAAAGATAA
  TTTAATTTTA CCACCAGATG GCAGCAGTGT AGAATTTTGA AAGTCTGAAC TGTATGTAGA
  TTTCTTCGAA AACCAGATAT TTTAAATTTC ATAAGTTTAA CTTGTCCTTT ATGATAATTC
  AGCTTCGTTG GAAGAAAGCT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss49565258	NES12888066	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	G	T	T	T		G	T	T		T
ss320671140	CHEV_3_16210966	CHEVERUD	SCREENING_POP	f	SNP											T				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs29759412					SNP	T	T	T	T	T	T	G	T	T	T	T	G	T	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49565258	NES12888066	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:16365130 () rs orientation: forward

Symbol	Name	Function Class
Rr573795	regulatory region 573795	within coordinates
Rr573796	regulatory region 573796	67 bp proximal