rs29759189 SNP Detail

Summary

• ID
  rs29759189
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:16991374 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTTTATTTG TTCATTTATT
  TTCTGATTTA CCCTTCTACT TAATGCTACA TGTACCTGCA CCTGGTGCTC TCCTGCGAGG
  TGACCCACTC AGCCTGGGGC TTGCCAACCG AGACTAGGAG TATCCAGGCC ACCAACCCAC
  CTTCTCAGTG AGCCCTTTCT CTGCCATAGA GAATTACAAG TGGTTAGTGT TTCCTTCTAC
  K
  TTCCCTTTCA ATACAAATGA GCAAACAAAA CAACAAATAG AACCAAGTAA TTTAAACTTT
  CTCTAGTTGA CTAGATCTTT TCCTCAACGC AAAGTTTTAC TAATAAATAT GAATCCTAAA
  AACATGTCAG TTTGGTGGAT AGTGATTGTA TATCTTCTGA GTTTTTGTTG CTTGGAGTTG
  CTTTTATTGC CTTTGTTCTC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
ss49565735	NES12906667	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	T	G	G	T	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
rs29759189					SNP	G	G	G	G	G	T	G	G	T	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49565735	NES12906667	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:16991374 () rs orientation: forward

Symbol	Name	Function Class
Rr573811	regulatory region 573811	979 bp proximal