rs29759188 SNP Detail

Summary

• ID
  rs29759188
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:16991462 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAGCCTGGG GCTTGCCAAC
  CGAGACTAGG AGTATCCAGG CCACCAACCC ACCTTCTCAG TGAGCCCTTT CTCTGCCATA
  GAGAATTACA AGTGGTTAGT GTTTCCTTCT ACGTTCCCTT TCAATACAAA TGAGCAAACA
  AAACAACAAA TAGAACCAAG TAATTTAAAC TTTCTCTAGT TGACTAGATC TTTTCCTCAA
  Y
  GCAAAGTTTT ACTAATAAAT ATGAATCCTA AAAACATGTC AGTTTGGTGG ATAGTGATTG
  TATATCTTCT GAGTTTTTGT TGCTTGGAGT TGCTTTTATT GCCTTTGTTC TCTGGGATTT
  TAATGTCCAA CCGTGAATGA TAAGTCCTCA TTTATTGAGT CACCAAAAAC ACTGAACACA
  TTATGCTGGC TACTGGGGTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
ss49565734	NES12906668	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	T	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
rs29759188					SNP	C	C	C	C	C	C	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49565734	NES12906668	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:16991462 () rs orientation: forward

Symbol	Name	Function Class
Rr573811	regulatory region 573811	891 bp proximal