rs29759187 SNP Detail

Summary

• ID
  rs29759187
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:16991488 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGGAGTATC CAGGCCACCA
  ACCCACCTTC TCAGTGAGCC CTTTCTCTGC CATAGAGAAT TACAAGTGGT TAGTGTTTCC
  TTCTACGTTC CCTTTCAATA CAAATGAGCA AACAAAACAA CAAATAGAAC CAAGTAATTT
  AAACTTTCTC TAGTTGACTA GATCTTTTCC TCAACGCAAA GTTTTACTAA TAAATATGAA
  Y
  CCTAAAAACA TGTCAGTTTG GTGGATAGTG ATTGTATATC TTCTGAGTTT TTGTTGCTTG
  GAGTTGCTTT TATTGCCTTT GTTCTCTGGG ATTTTAATGT CCAACCGTGA ATGATAAGTC
  CTCATTTATT GAGTCACCAA AAACACTGAA CACATTATGC TGGCTACTGG GGTAGGAGGC
  AACATATAAT TAATTCATGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
ss49565733	NES12906669	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	C	C	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
rs29759187					SNP	T	T	T	T	C	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49565733	NES12906669	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:16991488 () rs orientation: forward

Symbol	Name	Function Class
Rr573811	regulatory region 573811	865 bp proximal
Rr573812	regulatory region 573812	1996 bp proximal