rs29759186 SNP Detail

Summary

• ID
  rs29759186
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:16991876 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATTAATTCA TGGACCAAAC
  TCTACTCTTT TTCTAGGAAA TAAATAGCAT CCCAGGAACT GATACCTTTT TTGCCTAGAT
  GGCTTACTTT CTATGCTTTT TTCTTTTTAG CCTAATTACC CTGTGACATG GTATCTGAAC
  CTCATCCAGT CCCCCAGAAT TCACGAACTT TAGGGTGATC TTTAGGTATC CTTGACGTGT
  W
  CGCACCAAGT AGTGCTTGCT TGCTGAAGCA ATGGTGGCAT TGCCATCCTT AGGCTGCTTA
  GTCAAATGCA TATGATCCTG GCCCATGCAG TTCTTTGAAT CATCCAGAAA GACTGCTGTA
  TTTTCTCCAC ATGTGTATTT TGTTAGTTCC TGACTTTATG TGTTTTTTTT TTAGTTCAAA
  ATGTACAGAA TAGGCTCTAT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss45434596	mCV24701121	ABI	CRAMUS_MOUSE	f	SNP		A	T					T		T
ss49565732	NES12906671	PERLEGEN	MM_PANEL2	f	SNP	A		T	T	T	A	T		A		T	T	A	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs29759186					SNP	A	A	T	T	T	A	T	T	A	T	T	T	A	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49565732	NES12906671	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:16991876 () rs orientation: forward

Symbol	Name	Function Class
Rr573811	regulatory region 573811	477 bp proximal
Rr573812	regulatory region 573812	1608 bp proximal