rs29757840 SNP Detail

Summary

• ID
  rs29757840
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:16484259 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAAAGGGAA CTTAAAATGC
  TTGTGAGCTT GGAAGGTAGG GAGAGAGGCT AGAAACATAG ATACTAATTG ATCAGCTATG
  CTCTTTCATA ATGTATTTTA AAATTATGTA TTATTGGCTT ATCAGACAAT AGAATTTCTT
  CAAATTGGCA GGTATTTTAT TTCATGTCAA TTTTGAAGTC CAGAGAATTT GTGAAAAAGA
  S
  TCACAATACA GATATATTTG GTTGTTTCTA TGAGATTTGC TTGACTTTTA CAGTAGGTGA
  CCATTCCCCA ATTTTTTATT GCATAGTCTG GATGAGGGGA GGCTGAGCAA ACTGATTTTA
  AAATTGTGGA TGATTTATAA GATGACTATA ACAATCATTC ACTCAGGTGT CTGGGTAGTC
  TCCAGGCATT TATTATTTCT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49565036	NES12912494	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	G	C	C	G	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29757840					SNP	C	C	C	C	C	C	C	C	C	G	C	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49565036	NES12912494	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:16484259 () rs orientation: forward

Symbol	Name	Function Class
Rr573797	regulatory region 573797	1139 bp proximal