rs29757501 SNP Detail

Summary

• ID
  rs29757501
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:16233492 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGAATTTTG TCTTATTTAG
  TCATAATATC CAGGAAGTAA GAAAAACCAT TTGGTACTGA AGAAAGTTAA GTATCCATAG
  CTCCATTTGT ATTTTTAGTG TGACTTTTGG GTCCTGTGAA GAAGCTTTAC TCAATGCTGT
  CTTATAATTT GTATTCATTA TCCCAAAACT AGGCGGGACG GAAACTGTCA TGGTGACTGG
  Y
  CCCTAAAACA TTTAAAACGT TGGGGAAATA AACGCATCAG AGAAGCAGAT GGGGCTCCTC
  AGAAGGAGCT GCTGGCAATG GGCTGTTAAT CATTGATTAC TGACAAAGGG AGGATAAGCT
  CAGCGCCGAA TTCCTGGAAT TTCCTCAAGG CTTCACCAAA TATAGTAAAA CGAACATTTA
  GCAGCCAATC AGAAACCAAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss49563580	NES12891163	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs29757501					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49563580	NES12891163	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:16233492 () rs orientation: forward

Symbol	Name	Function Class
Rr573789	regulatory region 573789	2 bp proximal