rs29757273 SNP Detail

Summary

• ID
  rs29757273
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:16140829 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCTGTCTGT CTCTGTCTAT
  GTGCCTCTGA CATACATCAA CAATTCTGTT TTGAATAATT CTGTAATTCT TTTCTGAAAA
  GAGGCCTTAA AAAGTATTTT GTAGTCAGAC AAGTCTAAGG CATTTGTGTT TTGGGCTCAA
  GACCACTCAG TACCTGGAAG ACATGTACCA GGCCATGATC TATGTTTCAA TCAAGCTAGG
  Y
  ATGGCCTTGG AGAGCCACAG ATTACCATTG ATCTTATTAC TTTCACTTCT CTCCAGAGGG
  GAGGTGATGA ATTTTTTTCT TGTGTGTGAG CGCCATCTTC TGGTTGTTTT TCATTCCCAT
  CTGATAGAGA GGAAGGGACA TATTTTTCTC CCATGTTTTA TGTTTGTCAA GTTGTATGTG
  TACTTCTCAT TATGGGGTGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49563959	NES12893944	PERLEGEN	MM_PANEL2	f	SNP					T	C	T
ss134641623	ENSMUSSNP6733429	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29757273					SNP	T	T	T	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49563959	NES12893944	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:16140829 () rs orientation: forward

Symbol	Name	Function Class
Rr374571	regulatory region 374571	within coordinates
Rr573780	regulatory region 573780	within coordinates
Rr573781	regulatory region 573781	87 bp proximal
Rr573782	regulatory region 573782	421 bp proximal