rs29756949 SNP Detail

Summary

• ID
  rs29756949
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:16485138 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATATTTTACC TTCTGAGTTC
  TCTTATGAAA ACCTCTTCAG TCTTTTTAAG GTACAGGCTG ATGAATCTTT ATCAAAATTG
  CTTGGCGATT AAGTGTTTCA GATTTCTAAT GTTTTCAGAT TTTGAAGTTT TTTATATATA
  ATGAGACTGA AGTCCAAACA CAAAATTTAT TTATATAGTT CGTGCAATCT TATGCACATA
  R
  CCAGAAGGTA ATTTTATATA TGTAATACAT ACTATATTTT ATATTATAAA AGTACTATAT
  ACTTTTTTAT ACAAATTTGT TGTATACCTT AGACTTGCCT GCAGCACTTC ACATGAACTC
  AACTGAGGGG TTTTCCAGTT GTGTTGTCTT GTGGTCTCAA ATTTTTTAAA TTTTAAAGCA
  GTTTGGATTT GAGACATTAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49565025	NES12912477	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29756949					SNP	A	A	A	A	A	A	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49565025	NES12912477	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:16485138 () rs orientation: forward

Symbol	Name	Function Class
Rr573797	regulatory region 573797	260 bp proximal