rs29756242 SNP Detail

Summary

• ID
  rs29756242
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:14937705 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GTCTTTTCCT TAAACTGAAA ATTCAGGGTA AGTCACTTGT
  TTTAAGGTAA CATATGAAGT GACAAGCTTC ACTATGGCAG TGTCATTCGT GTTAGTGATT
  W
  TGCTTAGTTA TAACTCAGCC CTCCATCACT GCCCTCTCCA GGTGACAGCT TCCCACAAAG
  TCCCCTCCTC TGCTTTAATA GGAATTCCAT TGGCCTTCTT                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49562695	NES12886342	PERLEGEN	MM_PANEL2	f	SNP	A	A	T	A	T	T	A	T	A	A	T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29756242					SNP	A	A	T	A	T	T	A	T	A	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49562695	NES12886342	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:14937705 () rs orientation: forward

Symbol	Name	Function Class
Car3	carbonic anhydrase 3	264 bp downstream
Rr397608	regulatory region 397608	1757 bp upstream
Rr573713	regulatory region 573713	876 bp distal
Rr573714	regulatory region 573714	1824 bp proximal
Rr573715	regulatory region 573715	1920 bp proximal
Tssr28448	transcription start site region 28448	1099 bp downstream
Tssr28449	transcription start site region 28449	1035 bp downstream
Tssr28450	transcription start site region 28450	992 bp downstream
Tssr28451	transcription start site region 28451	975 bp downstream
Tssr28452	transcription start site region 28452	953 bp downstream
Tssr28453	transcription start site region 28453	940 bp downstream
Tssr28454	transcription start site region 28454	928 bp downstream
Tssr28455	transcription start site region 28455	910 bp downstream
Tssr28456	transcription start site region 28456	873 bp downstream
Tssr28457	transcription start site region 28457	811 bp downstream
Tssr28458	transcription start site region 28458	614 bp downstream
Tssr28459	transcription start site region 28459	577 bp downstream
Tssr28460	transcription start site region 28460	491 bp downstream
Tssr28461	transcription start site region 28461	435 bp downstream
Tssr28462	transcription start site region 28462	398 bp downstream
Tssr28463	transcription start site region 28463	347 bp downstream
Tssr28464	transcription start site region 28464	306 bp downstream
Tssr28465	transcription start site region 28465	167 bp downstream
Tssr32653	transcription start site region 32653	841 bp upstream
Tssr32654	transcription start site region 32654	108 bp upstream