rs29756240 SNP Detail

Summary

• ID
  rs29756240
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:14937784 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CACAA AGTCCCCTCC TCTGCTTTAA
  Y
  AGGAATTCCA TTGGCCTTCT TCTTT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss49562693	NES12886344	PERLEGEN	MM_PANEL2	f	SNP	T		C	T	C	T	C	C	C	C	T		C	T	T	C		T
ss134617878	ENSMUSSNP4371412	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C						C
ss320667818	CHEV_3_14872724	CHEVERUD	SCREENING_POP	f	SNP												T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs29756240					SNP	T	T	C	T	C	T	C	C	C	C	T	T	C	T	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49562693	NES12886344	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:14937784 () rs orientation: forward

Symbol	Name	Function Class
Car3	carbonic anhydrase 3	343 bp downstream
Rr397608	regulatory region 397608	1678 bp upstream
Rr573713	regulatory region 573713	955 bp distal
Rr573714	regulatory region 573714	1745 bp proximal
Rr573715	regulatory region 573715	1841 bp proximal
Tssr28448	transcription start site region 28448	1178 bp downstream
Tssr28449	transcription start site region 28449	1114 bp downstream
Tssr28450	transcription start site region 28450	1071 bp downstream
Tssr28451	transcription start site region 28451	1054 bp downstream
Tssr28452	transcription start site region 28452	1032 bp downstream
Tssr28453	transcription start site region 28453	1019 bp downstream
Tssr28454	transcription start site region 28454	1007 bp downstream
Tssr28455	transcription start site region 28455	989 bp downstream
Tssr28456	transcription start site region 28456	952 bp downstream
Tssr28457	transcription start site region 28457	890 bp downstream
Tssr28458	transcription start site region 28458	693 bp downstream
Tssr28459	transcription start site region 28459	656 bp downstream
Tssr28460	transcription start site region 28460	570 bp downstream
Tssr28461	transcription start site region 28461	514 bp downstream
Tssr28462	transcription start site region 28462	477 bp downstream
Tssr28463	transcription start site region 28463	426 bp downstream
Tssr28464	transcription start site region 28464	385 bp downstream
Tssr28465	transcription start site region 28465	246 bp downstream
Tssr32653	transcription start site region 32653	920 bp upstream
Tssr32654	transcription start site region 32654	187 bp upstream