rs29756239 SNP Detail

Summary

• ID
  rs29756239
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:14937816 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAACTGAAAA TTCAGGGTAA
  GTCACTTGTT TTAAGGTAAC ATATGAAGTG ACAAGCTTCA CTATGGCAGT GTCATTCGTG
  TTAGTGATTA TGCTTAGTTA TAACTCAGCC CTCCATCACT GCCCTCTCCA GGTGACAGCT
  TCCCACAAAG TCCCCTCCTC TGCTTTAATA GGAATTCCAT TGGCCTTCTT CTTTAAGATC
  Y
  CTTTCTCCCC TTCATGATCC CTTTTCTAGT TTCACGACTA CACACATATG TCTACACACA
  TATAATTTTA ATTCTGATTT ATATGAATGA AAGGAGATAT TCAGTATTTA TCTTTCTGAG
  GGCAAGGCAA TCGGTAAGGG AGTCAGACCA AGCTGCCAAC CTGGGCAGTG GGTGTTGGCC
  CATCTCATCA TGTGAGTGCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49562692	NES12886345	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29756239					SNP	T	T	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49562692	NES12886345	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:14937816 () rs orientation: forward

Symbol	Name	Function Class
Car3	carbonic anhydrase 3	375 bp downstream
Rr397608	regulatory region 397608	1646 bp upstream
Rr573713	regulatory region 573713	987 bp distal
Rr573714	regulatory region 573714	1713 bp proximal
Rr573715	regulatory region 573715	1809 bp proximal
Tssr28448	transcription start site region 28448	1210 bp downstream
Tssr28449	transcription start site region 28449	1146 bp downstream
Tssr28450	transcription start site region 28450	1103 bp downstream
Tssr28451	transcription start site region 28451	1086 bp downstream
Tssr28452	transcription start site region 28452	1064 bp downstream
Tssr28453	transcription start site region 28453	1051 bp downstream
Tssr28454	transcription start site region 28454	1039 bp downstream
Tssr28455	transcription start site region 28455	1021 bp downstream
Tssr28456	transcription start site region 28456	984 bp downstream
Tssr28457	transcription start site region 28457	922 bp downstream
Tssr28458	transcription start site region 28458	725 bp downstream
Tssr28459	transcription start site region 28459	688 bp downstream
Tssr28460	transcription start site region 28460	602 bp downstream
Tssr28461	transcription start site region 28461	546 bp downstream
Tssr28462	transcription start site region 28462	509 bp downstream
Tssr28463	transcription start site region 28463	458 bp downstream
Tssr28464	transcription start site region 28464	417 bp downstream
Tssr28465	transcription start site region 28465	278 bp downstream
Tssr32653	transcription start site region 32653	952 bp upstream
Tssr32654	transcription start site region 32654	219 bp upstream