rs29756238 SNP Detail

Summary

• ID
  rs29756238
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:14937888 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TATGT CTACACACAT ATAATTTTAA
  Y
  TCTGATTTAT ATGAATGAAA GGAGA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss49562691	NES12886346	PERLEGEN	MM_PANEL2	f	SNP	T		C	T	C	T	C	C	C	T		C	T	T		T
ss134617884	ENSMUSSNP5556524	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C					C
ss320667820	CHEV_3_14872828	CHEVERUD	SCREENING_POP	f	SNP											T				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs29756238					SNP	T	T	C	T	C	T	C	C	C	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49562691	NES12886346	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:14937888 () rs orientation: forward

Symbol	Name	Function Class
Car3	carbonic anhydrase 3	447 bp downstream
Rr397608	regulatory region 397608	1574 bp upstream
Rr573713	regulatory region 573713	1059 bp distal
Rr573714	regulatory region 573714	1641 bp proximal
Rr573715	regulatory region 573715	1737 bp proximal
Tssr28448	transcription start site region 28448	1282 bp downstream
Tssr28449	transcription start site region 28449	1218 bp downstream
Tssr28450	transcription start site region 28450	1175 bp downstream
Tssr28451	transcription start site region 28451	1158 bp downstream
Tssr28452	transcription start site region 28452	1136 bp downstream
Tssr28453	transcription start site region 28453	1123 bp downstream
Tssr28454	transcription start site region 28454	1111 bp downstream
Tssr28455	transcription start site region 28455	1093 bp downstream
Tssr28456	transcription start site region 28456	1056 bp downstream
Tssr28457	transcription start site region 28457	994 bp downstream
Tssr28458	transcription start site region 28458	797 bp downstream
Tssr28459	transcription start site region 28459	760 bp downstream
Tssr28460	transcription start site region 28460	674 bp downstream
Tssr28461	transcription start site region 28461	618 bp downstream
Tssr28462	transcription start site region 28462	581 bp downstream
Tssr28463	transcription start site region 28463	530 bp downstream
Tssr28464	transcription start site region 28464	489 bp downstream
Tssr28465	transcription start site region 28465	350 bp downstream
Tssr32653	transcription start site region 32653	1024 bp upstream
Tssr32654	transcription start site region 32654	291 bp upstream