rs29756235 SNP Detail

Summary

• ID
  rs29756235
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:14937987 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAATTCCATT GGCCTTCTTC
  TTTAAGATCT CTTTCTCCCC TTCATGATCC CTTTTCTAGT TTCACGACTA CACACATATG
  TCTACACACA TATAATTTTA ATTCTGATTT ATATGAATGA AAGGAGATAT TCAGTATTTA
  TCTTTCTGAG GGCAAGGCAA TCGGTAAGGG AGTCAGACCA AGCTGCCAAC CTGGGCAGTG
  R
  GTGTTGGCCC ATCTCATCAT GTGAGTGCTC CCAAAGCATT AAGTCAAAGT TGACGAGGAC
  TCTGGGATCC AGGCCAGTGC TATGAGCTAG TGCTCTTTTT AGTCATAACA GAACCTTTTA
  TATCATCTTT TTAAAAAATG TACAAAAAAG TACCACAAAA TGACATGTCC CGACAGTGCA
  GGAAGACATA TATCGACTTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49562688	NES12886349	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29756235					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49562688	NES12886349	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:14937987 () rs orientation: forward

Symbol	Name	Function Class
Car3	carbonic anhydrase 3	546 bp downstream
Rr397608	regulatory region 397608	1475 bp upstream
Rr573713	regulatory region 573713	1158 bp distal
Rr573714	regulatory region 573714	1542 bp proximal
Rr573715	regulatory region 573715	1638 bp proximal
Tssr28448	transcription start site region 28448	1381 bp downstream
Tssr28449	transcription start site region 28449	1317 bp downstream
Tssr28450	transcription start site region 28450	1274 bp downstream
Tssr28451	transcription start site region 28451	1257 bp downstream
Tssr28452	transcription start site region 28452	1235 bp downstream
Tssr28453	transcription start site region 28453	1222 bp downstream
Tssr28454	transcription start site region 28454	1210 bp downstream
Tssr28455	transcription start site region 28455	1192 bp downstream
Tssr28456	transcription start site region 28456	1155 bp downstream
Tssr28457	transcription start site region 28457	1093 bp downstream
Tssr28458	transcription start site region 28458	896 bp downstream
Tssr28459	transcription start site region 28459	859 bp downstream
Tssr28460	transcription start site region 28460	773 bp downstream
Tssr28461	transcription start site region 28461	717 bp downstream
Tssr28462	transcription start site region 28462	680 bp downstream
Tssr28463	transcription start site region 28463	629 bp downstream
Tssr28464	transcription start site region 28464	588 bp downstream
Tssr28465	transcription start site region 28465	449 bp downstream
Tssr32653	transcription start site region 32653	1123 bp upstream
Tssr32654	transcription start site region 32654	390 bp upstream