rs29755453 SNP Detail

Summary

• ID
  rs29755453
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:14938106 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCTTT TTAGTCATAA CAGAACCTTT
  Y
  ATATCATCTT TTTAAAAAAT GTACA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss49562686	NES12886351	PERLEGEN	MM_PANEL2	f	SNP	T		T	T	C	C	T		C	T	T	T		T
ss134617890	ENSMUSSNP5212176	ENSEMBL	ENSEMBL_Sanger	f	SNP		C
ss320667822	CHEV_3_14873046	CHEVERUD	SCREENING_POP	f	SNP								T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs29755453					SNP	T	C	T	T	C	C	T	T	C	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49562686	NES12886351	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:14938106 () rs orientation: forward

Symbol	Name	Function Class
Car3	carbonic anhydrase 3	665 bp downstream
Rr397608	regulatory region 397608	1356 bp upstream
Rr573713	regulatory region 573713	1277 bp distal
Rr573714	regulatory region 573714	1423 bp proximal
Rr573715	regulatory region 573715	1519 bp proximal
Tssr28448	transcription start site region 28448	1500 bp downstream
Tssr28449	transcription start site region 28449	1436 bp downstream
Tssr28450	transcription start site region 28450	1393 bp downstream
Tssr28451	transcription start site region 28451	1376 bp downstream
Tssr28452	transcription start site region 28452	1354 bp downstream
Tssr28453	transcription start site region 28453	1341 bp downstream
Tssr28454	transcription start site region 28454	1329 bp downstream
Tssr28455	transcription start site region 28455	1311 bp downstream
Tssr28456	transcription start site region 28456	1274 bp downstream
Tssr28457	transcription start site region 28457	1212 bp downstream
Tssr28458	transcription start site region 28458	1015 bp downstream
Tssr28459	transcription start site region 28459	978 bp downstream
Tssr28460	transcription start site region 28460	892 bp downstream
Tssr28461	transcription start site region 28461	836 bp downstream
Tssr28462	transcription start site region 28462	799 bp downstream
Tssr28463	transcription start site region 28463	748 bp downstream
Tssr28464	transcription start site region 28464	707 bp downstream
Tssr28465	transcription start site region 28465	568 bp downstream
Tssr32653	transcription start site region 32653	1242 bp upstream
Tssr32654	transcription start site region 32654	509 bp upstream