rs29755451 SNP Detail

Summary

• ID
  rs29755451
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:14938182 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGTGGGTGT TGGCCCATCT
  CATCATGTGA GTGCTCCCAA AGCATTAAGT CAAAGTTGAC GAGGACTCTG GGATCCAGGC
  CAGTGCTATG AGCTAGTGCT CTTTTTAGTC ATAACAGAAC CTTTTATATC ATCTTTTTAA
  AAAATGTACA AAAAAGTACC ACAAAATGAC ATGTCCCGAC AGTGCAGGAA GACATATATC
  S
  ACTTTTGATA CATTTAATGT TTCTAAACAC AAAGTCCAGT TGCACAGCCA AAAGGTGGTT
  ATCTTTCAGC TCTGAGTGGC TGATGTGTTA GTGACTGTAG AAAAGGGTAG CAATAGGCAG
  TGAGAACAGT CCTGGGTCCG GGAGCCCCGA GGCACTGGAA GTCAGACCAT GTGATAAAGT
  CCTGTGAGGC TGGAGTTATT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49562684	NES12886353	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	C	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29755451					SNP	G	G	G	G	G	G	G	G	G	G	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49562684	NES12886353	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:14938182 () rs orientation: forward

Symbol	Name	Function Class
Car3	carbonic anhydrase 3	741 bp downstream
Rr397608	regulatory region 397608	1280 bp upstream
Rr573713	regulatory region 573713	1353 bp distal
Rr573714	regulatory region 573714	1347 bp proximal
Rr573715	regulatory region 573715	1443 bp proximal
Rr573716	regulatory region 573716	1986 bp proximal
Tssr28448	transcription start site region 28448	1576 bp downstream
Tssr28449	transcription start site region 28449	1512 bp downstream
Tssr28450	transcription start site region 28450	1469 bp downstream
Tssr28451	transcription start site region 28451	1452 bp downstream
Tssr28452	transcription start site region 28452	1430 bp downstream
Tssr28453	transcription start site region 28453	1417 bp downstream
Tssr28454	transcription start site region 28454	1405 bp downstream
Tssr28455	transcription start site region 28455	1387 bp downstream
Tssr28456	transcription start site region 28456	1350 bp downstream
Tssr28457	transcription start site region 28457	1288 bp downstream
Tssr28458	transcription start site region 28458	1091 bp downstream
Tssr28459	transcription start site region 28459	1054 bp downstream
Tssr28460	transcription start site region 28460	968 bp downstream
Tssr28461	transcription start site region 28461	912 bp downstream
Tssr28462	transcription start site region 28462	875 bp downstream
Tssr28463	transcription start site region 28463	824 bp downstream
Tssr28464	transcription start site region 28464	783 bp downstream
Tssr28465	transcription start site region 28465	644 bp downstream
Tssr32653	transcription start site region 32653	1318 bp upstream
Tssr32654	transcription start site region 32654	585 bp upstream